PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016470442.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GeBP
Protein Properties Length: 247aa    MW: 28174.9 Da    PI: 9.6457
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016470442.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57395.26.6e-3050139297
          DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 
                      fqrlwseeDe+v+L  +i++++k+++sp ++ d fy f+k++++++v+ +ql eKirr+K+K+ ++  k       s++k+h++k fels+ iW
  XP_016470442.1  50 SFQRLWSEEDELVILERMIEYESKKNASPAANYDVFYTFIKDKLQAEVNITQLKEKIRRIKRKYMNNIGK------RSVAKPHEEKLFELSQTIW 138
                     79********************************************************************......89***************** PP

          DUF573  97 g 97 
                     g
  XP_016470442.1 139 G 139
                     8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.1E-2751139IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MASLNLTKNH RDDTLEESDK DWTLPSHSNN RKKRTTEKSA KKGANVDAKS FQRLWSEEDE  60
LVILERMIEY ESKKNASPAA NYDVFYTFIK DKLQAEVNIT QLKEKIRRIK RKYMNNIGKR  120
SVAKPHEEKL FELSQTIWGD NIVDKEKRAA KVDDDLPKAG KLIVAKEKNS LCGGSSGSSL  180
VLHGGSAADL EDWFRRNPGL ISKEQRHEVL KKSHSVKIAK AEHQLNEITL MEEQVNLMTD  240
AVKASQE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016470442.10.0PREDICTED: uncharacterized protein LOC107792722
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30421947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.11e-21DNA-binding storekeeper protein-related transcriptional regulator